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High Impact Phenotype Identification System will allow physicians to diagnose and treat genetic conditions in real time

DANVILLE, Pa. – A team of Geisinger researchers has been awarded a $5 million grant from the National Institute of Health’s National Human Genome Research Institute to develop a tool that will allow healthcare providers to diagnose a genetic basis for select medical conditions in real time. 

Determining that a medical condition has a genetic basis can have a significant impact on the course of treatment. The proposed High Impact Phenotype Identification System (HIPIS) will shorten the time between onset of symptoms and discovery of a genetic basis for 13 medical conditions, improving patient care and outcomes. 

“Complex diseases frustrate patients and create a burden on healthcare systems through multiple 
hospitalizations and frequent testing,” said Marc Williams, M.D., professor at Geisinger’s Genomic Medicine Institute and principal investigator for the project. “Enabling physicians to access genetic information in real time could prevent much of this burden by eliminating the gap between onset of symptoms and genetic diagnosis.” 

The research team has identified 13 “high-impact” conditions with a high likelihood of having a genetic basis or for which a genetic diagnosis would significantly affect or alter management of the condition. These include pediatric epilepsy, heart disease, Type 2 diabetes, and congenital kidney disease, among others. 

An analysis of Geisinger’s electronic health records showed that the average time from symptom onset for one of these conditions to diagnosis as a genetic condition is 3.5 years, and in some cases can take up to 12 years. This delay in genetic diagnosis can affect the patient’s treatment and overall health outcomes. 

Working alongside experts in each specialty, researchers will develop models that can identify patients with documented clinical signs and symptoms of these high-impact conditions and allow healthcare providers to screen for and diagnose a genetic basis in real time. The team will also analyze clinical workflow to determine the best points at which to present genetic information to providers.

“This project is a compelling example of something we do well at Geisinger – using robust genomic and clinical data to help make better health easy for our patients,” said Adam Buchanan, M.S., M.P.H., associate professor and director of Geisinger’s Genomic Medicine Institute.

Geisinger has an exciting research environment with more than 50 full-time research faculty and more than 30 clinician scientists. Areas of expertise include precision health, genomics, informatics, data science, implementation science, outcomes research, health services research, bioethics and clinical trials.

About Geisinger
Geisinger is among the nation’s leading providers of value-based care, serving 1.2 million people in urban and rural communities across Pennsylvania. Founded in 1915 by philanthropist Abigail Geisinger, the nonprofit system generates $10 billion in annual revenues across 126 care sites — including 10 hospital campuses — and Geisinger Health Plan, with more than half a million members in commercial and government plans. Geisinger College of Health Sciences educates more than 5,000 medical professionals annually and conducts more than 1,400 clinical research studies. With 26,000 employees, including 1,700 employed physicians, Geisinger is among Pennsylvania’s largest employers with an estimated economic impact of $15 billion to the state’s economy. On March 31, 2024, Geisinger became the first member of Risant Health, a new nonprofit charitable organization created to expand and accelerate value-based care across the country. Learn more at or follow on Facebook, Instagram, LinkedIn and X.

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